DNA Systems Under Internal and External Forcing

DNA Systems Under Internal and External Forcing PDF Author: Megan Clare Engel
Publisher: Springer Nature
ISBN: 3030254135
Category : Science
Languages : en
Pages : 144

Book Description
The interactions of DNA with force are central to manifold fields of inquiry, including the de novo design of DNA nanostructures, the use of DNA to probe the principles of biological self-assembly, and the operation of cellular nanomachines. This work presents a survey of three distinct ways coarse-grained simulations can help characterize these interactions. A non-equilibrium energy landscape reconstruction technique is validated for use with the oxDNA model and a practical framework to guide future applications is established. A novel method for calculating entropic forces in DNA molecules is outlined and contrasted with existing, flawed approaches. Finally, a joint experimental-simulation study of large DNA origami nanostructures under force sheds light on design principles and, through vivid illustrations, their unfolding process. This text provides an accessible and exciting launching point for any student interested in the computational study of DNA mechanics and force interactions.

Molecular Biology of the Male Reproductive System

Molecular Biology of the Male Reproductive System PDF Author: David de Kretser
Publisher: Elsevier
ISBN: 008091764X
Category : Science
Languages : en
Pages : 483

Book Description
Written by experts in their respective fields, this book reviews the expanding knowledge concerning the mechanisms regulating male reproduction at the molecular and cellular levels. It covers the development of the testes and regulatory controls for spermatogenesis and steroidogenesis, and it considers aspects of Sertoli cell function. Areas of emphasis include communication between the various cell types involved in reproduction by hormone and growth factors and the mechanisms by which these factors regulate gene expression. A number of mammalian systems, including humans, are covered. The carefully selected authors provide a clear synopsis of the concepts in each area as well as the latest references, enabling the reader to investigate the topic further. This book is of interest to those seeking an understanding of the regulatory mechanisms in male reproduction and is written for the graduate and postgraduate levels. Key Features * Provides up-to-date reviews of the molecular and cellular biology of male reproduction * Includes chapters on the developmental biology of the testes * Links conventional hormonal control of testicular function with the evolving role of growth factors and proto-oncogenes

Properties of Life

Properties of Life PDF Author: Bernd Rosslenbroich
Publisher: MIT Press
ISBN: 0262375389
Category : Science
Languages : en
Pages : 327

Book Description
A coherent and comprehensive theory of life that synthesizes the specific properties of living organisms. Despite continued advances, science has until now struggled to describe the specific properties that define a living being. By synthesizing several aspects of organismic biology and contemporary science, Properties of Life by Bernd Rosslenbroich generates a coherent concept of the singular quality of being alive—a concept that provides a crucial foundation for scientists, farmers, and medical practitioners and helps explain how we all interact with the world around us and within ourselves. Is an organism an aggregate of parts or an integrated system with agency? Is it a passive stimulus-response machine or a being equipped with subjectivity and consciousness? Rosslenbroich argues that the way people in different fields understand life determines their assumptions about organic function and behavior. In medicine, this extends to the human organism, which influences prevention, diagnosis, and treatment. Drawing attention to a long-standing but underappreciated line of thought in organismic biology, Rosslenbroich’s original idea emphasizes the autonomy of living processes, their network characteristics, and their self-determined organization in time and structure. A timely and revelatory book, Properties of Life formulates an integrated, unified theory that remains flexible enough to accommodate future developments and resilient enough to withstand the challenges of different theoretical and disciplinary backgrounds.

Advanced Mechanical Models of DNA Elasticity

Advanced Mechanical Models of DNA Elasticity PDF Author: Yakov M Tseytlin
Publisher: Academic Press
ISBN: 0128020369
Category : Science
Languages : en
Pages : 316

Book Description
Advanced Mechanical Models of DNA Elasticity includes coverage on 17 different DNA models and the role of elasticity in biological functions with extensive references. The novel advanced helicoidal model described reflects the direct connection between the molecule helix structure and its specific properties, including nonlinear features and transitions. It provides an introduction to the state of the field of DNA mechanics, known and widely used models with their short analysis, as well as coverage on experimental methods and data, the influence of electrical, magnetic, ionic conditions on the persistence length, and dynamics with viscosity influence. It then addresses the need to understand the nature of the non-linear overstretching transition of DNA under force and why DNA has a negative twist-stretch coupling. Includes coverage of 17 contemporary models of DNA mechanics with analysis Provides comparison of DNA and RNA mechanical features Covers advances in experimental techniques including AFM, X-ray, and optical tweezers Contains extensive references for further reading

Comprehensive Biophysics

Comprehensive Biophysics PDF Author:
Publisher: Academic Press
ISBN: 0080957188
Category : Science
Languages : en
Pages : 3533

Book Description
Biophysics is a rapidly-evolving interdisciplinary science that applies theories and methods of the physical sciences to questions of biology. Biophysics encompasses many disciplines, including physics, chemistry, mathematics, biology, biochemistry, medicine, pharmacology, physiology, and neuroscience, and it is essential that scientists working in these varied fields are able to understand each other's research. Comprehensive Biophysics, Nine Volume Set will help bridge that communication gap. Written by a team of researchers at the forefront of their respective fields, under the guidance of Chief Editor Edward Egelman, Comprehensive Biophysics, Nine Volume Set provides definitive introductions to a broad array of topics, uniting different areas of biophysics research - from the physical techniques for studying macromolecular structure to protein folding, muscle and molecular motors, cell biophysics, bioenergetics and more. The result is this comprehensive scientific resource - a valuable tool both for helping researchers come to grips quickly with material from related biophysics fields outside their areas of expertise, and for reinforcing their existing knowledge. Biophysical research today encompasses many areas of biology. These studies do not necessarily share a unique identifying factor. This work unites the different areas of research and allows users, regardless of their background, to navigate through the most essential concepts with ease, saving them time and vastly improving their understanding The field of biophysics counts several journals that are directly and indirectly concerned with the field. There is no reference work that encompasses the entire field and unites the different areas of research through deep foundational reviews. Comprehensive Biophysics fills this vacuum, being a definitive work on biophysics. It will help users apply context to the diverse journal literature offering, and aid them in identifying areas for further research Chief Editor Edward Egelman (E-I-C, Biophysical Journal) has assembled an impressive, world-class team of Volume Editors and Contributing Authors. Each chapter has been painstakingly reviewed and checked for consistent high quality. The result is an authoritative overview which ties the literature together and provides the user with a reliable background information and citation resource

Movement System Variability

Movement System Variability PDF Author: Keith Davids
Publisher: Human Kinetics
ISBN: 9780736044820
Category : Efferent pathways
Languages : en
Pages : 384

Book Description
This in-depth, multidisciplinary analysis of the latest research adds a new theoretical interpretation to the role of variability in movement behaviour. Many scientific disciplines are represented in the text and each chapter examines a range of topics.

The Implicit Genome

The Implicit Genome PDF Author: Lynn Helena Caporale
Publisher: Oxford University Press
ISBN: 9780195172706
Category : Science
Languages : en
Pages : 399

Book Description
In its beautiful simplicity, the double-helicaln stucture of DNA had entranced us into believing that we can fully understand the information content of a DNA sequence, simply by treating it as text that is read in a linear fashion. While we have learned much based on this assumption, there is much we have missed. Far from a passive tape running through a reader, genomes contain information that appears in new forms which create regions with distinct behavior. The chapters in this volume touch on one or more of three interconnected themes; information can be implied, rather than explicit, in a genome; information can lead to focused and/or regulated changes in nucleotide sequences; information that affects the probability of distinct classes of mutation has implications for evolutionary theory.

Introduction to Modern Biophysics

Introduction to Modern Biophysics PDF Author: Mohammad Ashrafuzzaman
Publisher: CRC Press
ISBN: 1003821642
Category : Science
Languages : en
Pages : 603

Book Description
This textbook provides an introduction to the fundamental and applied aspects of biophysics for advanced undergraduate and graduate students of physics, chemistry, and biology. The application of physics principles and techniques in exploring biological systems has long been a tradition in scientific research. Biological systems hold naturally inbuilt physical principles and processes which are popularly explored. Systematic discoveries help us understand the structures and functions of individual biomolecules, biomolecular systems, cells, organelles, tissues, and even the physiological systems of animals and plants. Utilizing a physics- based scientific understanding of biological systems to explore disease is at the forefront of applied scientific research. This textbook covers key breakthroughs in biophysics whilst looking ahead to future horizons and directions of research. It contains models based on both classical and quantum mechanical treatments of biological systems. It explores diseases related to physical alterations in biomolecular structures and organizations alongside drug discovery strategies. It also discusses the cutting- edge applications of nanotechnologies in manipulating nanoprocesses in biological systems. Key Features: • Presents an accessible introduction to how physics principles and techniques can be used to understand biological and biochemical systems. • Addresses natural processes, mutations, and their purposeful manipulation. • Lays the groundwork for vitally important natural scientific, technological, and medical advances. Mohammad Ashrafuzzaman, a biophysicist and condensed matter scientist, is passionate about investigating biological and biochemical processes utilizing physics principles and techniques. He is a professor of biophysics at King Saud University’s Biochemistry Department in the College of Science, Riyadh, Saudi Arabia; the co- founder of MDT Canada Inc., and the founder of Child Life Development Institute, Edmonton, Canada. He has authored Biophysics and Nanotechnology of Ion Channels, Nanoscale Biophysics of the Cell, and Membrane Biophysics. He has also published about 50 peer- reviewed articles and several patents, edited two books, and has been serving on the editorial boards of Elsevier and Bentham Science journals. Dr. Ashrafuzzaman has held research and academic ranks at Bangladesh University of Engineering & Technology, University of Neuchatel (Switzerland), Helsinki University of Technology (Finland), Weill Medical College of Cornell University (USA), and University of Alberta (Canada). During 2013– 2018 he also served as a Visiting Professor at the Departments of Oncology, and Medical Microbiology and Immunology, of the University of Alberta. Dr. Ashrafuzzaman earned his highest academic degree, Doctor of Science (D.Sc.) in condensed matter physics from the University of Neuchatel, Switzerland in 2004.

Introductory Physics for the Life Sciences

Introductory Physics for the Life Sciences PDF Author: Simon Mochrie
Publisher: Springer Nature
ISBN: 3031058089
Category : Science
Languages : en
Pages : 860

Book Description
This classroom-tested textbook is an innovative, comprehensive, and forward-looking introductory undergraduate physics course. While it clearly explains physical principles and equips the student with a full range of quantitative tools and methods, the material is firmly grounded in biological relevance and is brought to life with plenty of biological examples throughout. It is designed to be a self-contained text for a two-semester sequence of introductory physics for biology and premedical students, covering kinematics and Newton’s laws, energy, probability, diffusion, rates of change, statistical mechanics, fluids, vibrations, waves, electromagnetism, and optics. Each chapter begins with learning goals, and concludes with a summary of core competencies, allowing for seamless incorporation into the classroom. In addition, each chapter is replete with a wide selection of creative and often surprising examples, activities, computational tasks, and exercises, many of which are inspired by current research topics, making cutting-edge biological physics accessible to the student.

Complexity Leadership

Complexity Leadership PDF Author: Mary Uhl-Bien
Publisher: IAP
ISBN: 160752628X
Category : Business & Economics
Languages : en
Pages : 449

Book Description
This book introduces leadership and organizational scholars to the potenial of complexity science for broadening leadership study beyond its traditional focus on leaders’ actions and influence, to a consideration of leadership as a broader, dynamically and interactive organizing process. The book offers a primer on complexity science and its applications to organization studies, and compares the logics of complexity science with those underlying traditional leadership approaches. It describes methodological approaches for studying leadership from a complexity perspective, and offers examples of applications of complexity science to leadership theory. Chapters are written by top scholars in complexity and leadership theory.