Guide to Analysis of DNA Microarray Data, 2nd Edition and Microarray Analysis Set PDF Download

Author: Mark Schena
Publisher: Wiley-Liss
ISBN: 9780471678533
Category : Science
Languages : en
Pages : 852

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Book Description
The text provides an introduction to microarray technology, then moving on to image analysis, data analysis, cluster analysis, and beyond. With all chapters rewritten, updated, and expanded to include the latest generation of technology and methods, Guide to Analysis of DNA Microarray Data, Second Edition offers practitioners reliable information using concrete examples and a clear, comprehensible style. This Second Edition features entirely new chapters on: * Image analysis * Integrated analysis, and systems biology * Experiment design * Interpretation of results * Automated analysis, Intended for readers seeking practical applications, this text covers a broad spectrum of proven approaches in this rapidly growing technology. Additional features include further reading suggestions for each chapter, as well as a thorough review of available analysis software.

Author: Steen Knudsen
Publisher: John Wiley & Sons
ISBN: 047167026X
Category : Science
Languages : en
Pages : 194

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Book Description
Written for biologists and medical researchers who don't have any special training in data analysis and statistics, Guide to Analysis of DNA Microarray Data, Second Edition begins where DNA array equipment leaves off: the image produced by the microarray. The text deals with the questions that arise starting at this point, providing an introduction to microarray technology, then moving on to image analysis, data analysis, cluster analysis, and beyond. With all chapters rewritten, updated, and expanded to include the latest generation of technology and methods, Guide to Analysis of DNA Microarray Data, Second Edition offers practitioners reliable information using concrete examples and a clear, comprehensible style. This Second Edition features entirely new chapters on: * Image analysis * Experiment design * Automated analysis, integrated analysis, and systems biology * Interpretation of results Intended for readers seeking practical applications, this text covers a broad spectrum of proven approaches in this rapidly growing technology. Additional features include further reading suggestions for each chapter, as well as a thorough review of available analysis software.

Author: Steen Knudsen
Publisher: John Wiley & Sons
ISBN: 0471461180
Category : Science
Languages : en
Pages : 148

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Book Description
A great introductory book that details reliable approaches to problems met in standard microarray data analyses. It provides examples of established approaches such as cluster analysis, function prediction, and principle component analysis. Discover real examples to illustrate the key concepts of data analysis. Written for those without any advanced background in math, statistics, or computer sciences, this book is essential for anyone interested in harnessing the immense potential of microarrays in biology and medicine.

Author: Dhammika Amaratunga
Publisher: John Wiley & Sons
ISBN: 111836452X
Category : Mathematics
Languages : en
Pages : 344

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Book Description
Praise for the First Edition “…extremely well written…a comprehensiveand up-to-date overview of this important field.” –Journal of Environmental Quality Exploration and Analysis of DNA Microarray and OtherHigh-Dimensional Data, Second Edition provides comprehensivecoverage of recent advancements in microarray data analysis. Acutting-edge guide, the Second Edition demonstrates variousmethodologies for analyzing data in biomedical research and offersan overview of the modern techniques used in microarray technologyto study patterns of gene activity. The new edition answers the need for an efficient outline of allphases of this revolutionary analytical technique, frompreprocessing to the analysis stage. Utilizing research andexperience from highly-qualified authors in fields of dataanalysis, Exploration and Analysis of DNA Microarray and OtherHigh-Dimensional Data, Second Edition features: A new chapter on the interpretation of findings that includes adiscussion of signatures and material on gene set analysis,including network analysis New topics of coverage including ABC clustering, biclustering,partial least squares, penalized methods, ensemble methods, andenriched ensemble methods Updated exercises to deepen knowledge of the presented materialand provide readers with resources for further study The book is an ideal reference for scientists in biomedical andgenomics research fields who analyze DNA microarrays and proteinarray data, as well as statisticians and bioinformaticspractitioners. Exploration and Analysis of DNA Microarray andOther High-Dimensional Data, Second Edition is also a usefultext for graduate-level courses on statistics, computationalbiology, and bioinformatics.

Author: Geoffrey J. McLachlan
Publisher: John Wiley & Sons
ISBN: 0471726125
Category : Mathematics
Languages : en
Pages : 366

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Book Description
A multi-discipline, hands-on guide to microarray analysis of biological processes Analyzing Microarray Gene Expression Data provides a comprehensive review of available methodologies for the analysis of data derived from the latest DNA microarray technologies. Designed for biostatisticians entering the field of microarray analysis as well as biologists seeking to more effectively analyze their own experimental data, the text features a unique interdisciplinary approach and a combined academic and practical perspective that offers readers the most complete and applied coverage of the subject matter to date. Following a basic overview of the biological and technical principles behind microarray experimentation, the text provides a look at some of the most effective tools and procedures for achieving optimum reliability and reproducibility of research results, including: An in-depth account of the detection of genes that are differentially expressed across a number of classes of tissues Extensive coverage of both cluster analysis and discriminant analysis of microarray data and the growing applications of both methodologies A model-based approach to cluster analysis, with emphasis on the use of the EMMIX-GENE procedure for the clustering of tissue samples The latest data cleaning and normalization procedures The uses of microarray expression data for providing important prognostic information on the outcome of disease

Author: Dhammika Amaratunga
Publisher: John Wiley & Sons
ISBN: 0470317965
Category : Mathematics
Languages : en
Pages : 270

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Book Description
A cutting-edge guide to the analysis of DNA microarray data Genomics is one of the major scientific revolutions of this century, and the use of microarrays to rapidly analyze numerous DNA samples has enabled scientists to make sense of mountains of genomic data through statistical analysis. Today, microarrays are being used in biomedical research to study such vital areas as a drug’s therapeutic value–or toxicity–and cancer-spreading patterns of gene activity. Exploration and Analysis of DNA Microarray and Protein Array Data answers the need for a comprehensive, cutting-edge overview of this important and emerging field. The authors, seasoned researchers with extensive experience in both industry and academia, effectively outline all phases of this revolutionary analytical technique, from the preprocessing to the analysis stage. Highlights of the text include: A review of basic molecular biology, followed by an introduction to microarrays and their preparation Chapters on processing scanned images and preprocessing microarray data Methods for identifying differentially expressed genes in comparative microarray experiments Discussions of gene and sample clustering and class prediction Extension of analysis methods to protein array data Numerous exercises for self-study as well as data sets and a useful collection of computational tools on the authors’ Web site make this important text a valuable resource for both students and professionals in the field.

Author: Simon M. Lin
Publisher: Springer Science & Business Media
ISBN: 0306475987
Category : Science
Languages : en
Pages : 214

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Book Description
Microarray technology is a major experimental tool for functional genomic explorations, and will continue to be a major tool throughout this decade and beyond. The recent explosion of this technology threatens to overwhelm the scientific community with massive quantities of data. Because microarray data analysis is an emerging field, very few analytical models currently exist. Methods of Microarray Data Analysis II is the second book in this pioneering series dedicated to this exciting new field. In a single reference, readers can learn about the most up-to-date methods, ranging from data normalization, feature selection, and discriminative analysis to machine learning techniques. Currently, there are no standard procedures for the design and analysis of microarray experiments. Methods of Microarray Data Analysis II focuses on a single data set, using a different method of analysis in each chapter. Real examples expose the strengths and weaknesses of each method for a given situation, aimed at helping readers choose appropriate protocols and utilize them for their own data set. In addition, web links are provided to the programs and tools discussed in several chapters. This book is an excellent reference not only for academic and industrial researchers, but also for core bioinformatics/genomics courses in undergraduate and graduate programs.

Author: Sorin Draghici
Publisher: CRC Press
ISBN: 1439809763
Category : Computers
Languages : en
Pages : 1036

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Book Description
Richly illustrated in color, Statistics and Data Analysis for Microarrays Using R and Bioconductor, Second Edition provides a clear and rigorous description of powerful analysis techniques and algorithms for mining and interpreting biological information. Omitting tedious details, heavy formalisms, and cryptic notations, the text takes a hands-on,

Author: Eric M. Blalock
Publisher: Springer Science & Business Media
ISBN: 1441987606
Category : Science
Languages : en
Pages : 356

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Book Description
A Beginner's Guide to Microarrays addresses two audiences - the core facility manager who produces, hybridizes, and scans arrays, and the basic research scientist who will be performing the analysis and interpreting the results. User friendly coverage and detailed protocols are provided for the technical steps and procedures involved in many facets of microarray technology, including: -Cleaning and coating glass slides, -Designing oligonucleotide probes, -Constructing arrays for the detection and quantification of different bacterial species, -Preparing spotting solutions, -Troubleshooting spotting problems, -Setting up and running a core facility, -Normalizing background signal and controlling for systematic variance, -Designing experiments for maximum effect, -Analyzing data with statistical procedures, -Clustering data with machine-learning protocols.

Author: Simon M. Lin
Publisher: Springer Science & Business Media
ISBN: 1461508738
Category : Science
Languages : en
Pages : 192

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Book Description
Microarray technology is a major experimental tool for functional genomic explorations, and will continue to be a major tool throughout this decade and beyond. The recent explosion of this technology threatens to overwhelm the scientific community with massive quantities of data. Because microarray data analysis is an emerging field, very few analytical models currently exist. Methods of Microarray Data Analysis is one of the first books dedicated to this exciting new field. In a single reference, readers can learn about the most up-to-date methods ranging from data normalization, feature selection and discriminative analysis to machine learning techniques. Currently, there are no standard procedures for the design and analysis of microarray experiments. Methods of Microarray Data Analysis focuses on two well-known data sets, using a different method of analysis in each chapter. Real examples expose the strengths and weaknesses of each method for a given situation, aimed at helping readers choose appropriate protocols and utilize them for their own data set. In addition, web links are provided to the programs and tools discussed in several chapters. This book is an excellent reference not only for academic and industrial researchers, but also for core bioinformatics/genomics courses in undergraduate and graduate programs.