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Author: Agnessa Babloyantz Publisher: Wiley-Interscience ISBN: Category : Science Languages : en Pages : 376
Book Description
This book tells the story of how inert matter can acquire self-organizing and other properties ascribed to life. The author's multidisciplinary approach does not require knowledge of chemistry, physics, or biology on the part of the reader. Part I covers the properties of matter and evolutionary criteria. Part II presents an introduction to the necessary chemical concepts. Part III explains the self-organization of biosystems and the development of organisms.
Author: Agnessa Babloyantz Publisher: Wiley-Interscience ISBN: Category : Science Languages : en Pages : 376
Book Description
This book tells the story of how inert matter can acquire self-organizing and other properties ascribed to life. The author's multidisciplinary approach does not require knowledge of chemistry, physics, or biology on the part of the reader. Part I covers the properties of matter and evolutionary criteria. Part II presents an introduction to the necessary chemical concepts. Part III explains the self-organization of biosystems and the development of organisms.
Author: Toshio Yanagida Publisher: John Wiley & Sons ISBN: 352762614X Category : Science Languages : en Pages : 346
Book Description
In this first comprehensive resource to cover the application of single molecule techniques to biological measurements, the pioneers in the field show how to both set up and interpret a single molecule experiment. Following an introduction to single molecule measurements and enzymology, the expert authors consider molecular motors and mechanical properties before moving on to the applications themselves. Detailed discussions of studies on protein enzymes, ribozymes and nucleic acids are also included.
Author: Franklin M. Harold Publisher: Oxford University Press, USA ISBN: 0195163389 Category : Science Languages : en Pages : 320
Book Description
A leading microbiologist provides thought-provoking insights into the question of "What is Life?" as he examines the relationship of living things to the inorganic realms of physics and chemistry, explains how lifeless chemicals come together to form living beings, and details the true complexity of seemingly simple microorganisms such as E. coli.
Author: Maria Emilova Velinova Publisher: Delve Publishing ISBN: 9781773610849 Category : Languages : en Pages : 0
Book Description
Molecular dynamics method is a numerical statistical mechanics technique for integration of the equations of motion for a many-particle system. The particle-particle interactions and the energy are quantified using the potentials and parameter sets of molecular-mechanics force fields. The resulting trajectories can then be used to evaluate various time-dependent structural, transport and thermodynamic properties of the system.In this book, Molecular Dynamics Simulations, it is presented the state-of-the-art in the field, from both a methodological and application perspective. The book begins with a brief introduction of the molecular dynamics simulations formalism. Important definitions and terminology, used later in the book, have been explained. For example, terms as integrators, SHAKE (or LINCS) algorithm, periodical boundary conditions, cutoff, ensemble and many others are considered in the introduction.Molecular dynamics simulations are suitable for describing of systems with extensive number of degrees of freedom such as the biologically relevant targets. The next parts contain collection of articles, which illustrate the computer experiments using molecular dynamics simulations in the studies of synthetic and biological macromolecules. The topics covered of this book include: molecular dynamics simulations of biological membranes, proteins, polymers, peptides, and nanotubes.
Author: Jan Spitzer Publisher: MIT Press ISBN: 0262045575 Category : Science Languages : en Pages : 249
Book Description
A reconceptualization of origins research that exploits a modern understanding of non-covalent molecular forces that stabilize living prokaryotic cells. Scientific research into the origins of life remains exploratory and speculative. Science has no definitive answer to the biggest questions--"What is life?" and "How did life begin on earth?" In this book, Jan Spitzer reconceptualizes origins research by exploiting a modern understanding of non-covalent molecular forces and covalent bond formation--a physicochemical approach propounded originally by Linus Pauling and Max Delbrück. Spitzer develops the Pauling-Delbrück premise as a physicochemical jigsaw puzzle that identifies key stages in life's emergence, from the formation of first oceans, tidal sediments, and proto-biofilms to progenotes, proto-cells and the first cellular organisms.
Author: Peter M. Hoffmann Publisher: ISBN: 0465022537 Category : Science Languages : en Pages : 290
Book Description
Life, Hoffman argues, emerges from the random motions of atoms filtered through the sophisticated structures of our evolved machinery. People are essentially giant assemblies of interacting nanoscale machines.
Author: Mark S. Kemp Publisher: Nova Science Publishers ISBN: 9781536160550 Category : Science Languages : en Pages : 184
Book Description
"In the opening chapter of An Introduction to Molecular Dynamics, the method of statistical geometry, based on the construction of a Voronoi polyhedral, is applied to the pattern recognition of atomic environments and to the investigation of the local order in molecular dynamics-simulated materials. Next, the authors discuss the methodology of bimolecular simulations and their advancements, as well as their applications in the field of nanoparticle-biomolecular interactions. The theory of molecular dynamics simulation and some of the recent molecular dynamics methods such as steered molecular dynamics, umbrella sampling, and coarse-grained simulation are also discussed. The use of auxiliary programs in the cases of modified cyclodextrins is discussed. Additionally, results from molecular dynamics studies on cases of inclusion compounds of molecules of different sizes and shapes encapsulated in the same host cyclodextrin have been examined and compared. In closing, the authors discuss the methodology of molecular dynamics simulation with a non-constant force field. In the context of molecular simulations, the term "force field" refers to a set of equations and parameters for the calculation of forces acting on the particles of the system and its potential energy"--
Author: Raphael D. Levine Publisher: Cambridge University Press ISBN: 9781139442879 Category : Technology & Engineering Languages : en Pages : 574
Book Description
Molecular reaction dynamics is the study of chemical and physical transformations of matter at the molecular level. The understanding of how chemical reactions occur and how to control them is fundamental to chemists and interdisciplinary areas such as materials and nanoscience, rational drug design, environmental and astrochemistry. This book provides a thorough foundation to this area. The first half is introductory, detailing experimental techniques for initiating and probing reaction dynamics and the essential insights that have been gained. The second part explores key areas including photoselective chemistry, stereochemistry, chemical reactions in real time and chemical reaction dynamics in solutions and interfaces. Typical of the new challenges are molecular machines, enzyme action and molecular control. With problem sets included, this book is suitable for advanced undergraduate and graduate students, as well as being supplementary to chemical kinetics, physical chemistry, biophysics and materials science courses, and as a primer for practising scientists.
Author: Kun Zhou Publisher: Academic Press ISBN: 0128166169 Category : Technology & Engineering Languages : en Pages : 375
Book Description
Molecular Dynamic Simulation: Fundamentals and Applications explains the basic principles of MD simulation and explores its recent developments and roles in advanced modeling approaches. The implementation of MD simulation and its application to various aspects of materials science and engineering including mechanical, thermal, mass transportation, and physical/chemical reaction problems are illustrated. Innovative modeling techniques that apply MD to explore the mechanics of typical nanomaterials and nanostructures and to characterize crystalline, amorphous, and liquid systems are also presented. The rich research experience of the authors in MD simulation will ensure that the readers are provided with both an in-depth understanding of MD simulation and clear technical guidance. Provides a comprehensive overview of the underlying theories of molecular dynamics (MD) simulation Presents application-based examples pertaining to a broad range of mechanical, thermal, and mass transport problems Explores innovative modeling techniques for simulating typical nanomaterials and nanostructures and for characterizing crystalline, amorphous, and liquid systems
Author: Werner Ebeling Publisher: World Scientific ISBN: 9789812795434 Category : Mathematics Languages : en Pages : 348
Book Description
This is a book about the physical processes in reacting complex molecules, particularly biomolecules. In the past decade scientists from different fields such as medicine, biology, chemistry and physics have collected a huge amount of data about the structure, dynamics and functioning of biomolecules. Great progress has been achieved in exploring the structure of complex molecules. However, there is still a lack of understanding of the dynamics and functioning of biological macromolecules. In particular this refers to enzymes, which are the basic molecular machines working in living systems. This book contributes to the exploration of the physical mechanisms of these processes, focusing on critical aspects such as the role of nonlinear excitations and of stochastic effects. An extensive range of original results has been obtained in the last few years by the authors, and these results are presented together with a comprehensive survey of the state of the art in the field. Contents: Introduction to the Reaction Theory and Cluster Dynamics of Enzymes (W Ebeling, A Netrebko & Yu Romanovsky); Tools of Stochastic Dynamics (L Schimansky-Geier & P Talkner); Motion of Test Particles in a 2-D Potential Landscape (O A Chichigina, A V Netrebko & N V Netrebko); Microscopic Simulations of Activation and Dissociation (W Ebeling, V Yu Podlipchuk, M G Sapeshinsky & A A Valuev); Excitations on Rings of Molecules (A Chetverikov, W Ebeling, M Jenssen & Yu Romanovsky); Fermi Resonance and Kramers Problem in 2-D Force Field (S V Kroo, A V Netrebko, Yu M Romanovsky & L Schimansky-Geier); Molecular Scissors. Cluster Model of Acetylcholinesterase (A Yu Chikishev, S V Kroo, A V Netrebko, N V Netrebko & Yu Romanovsky); Dynamics of Proton Transfer in the Active Site of Chymotrypsin (A Yu Chikishev, B A Grishanin & E V Shuvalova); On the Damping of Cluster Oscillations in Protein Molecules (A Yu Chikishev, A V Netrebko & Yu M Romanovsky); Protein Dynamics and New Approaches to the Molecular Mechanisms of Protein Functioning (K V Shaitan). Readership: Researchers and graduate students in physics, biophysics, molecular biology and the life sciences; experts on nonlinear dynamics and the stochastic process in molecular systems and biomolecules.
Author: Agnessa Babloyantz
Author: Agnessa Babloyantz
Author: Toshio Yanagida
Author: Franklin M. Harold
Author: Maria Emilova Velinova
Author: Jan Spitzer
Author: Peter M. Hoffmann
Author: Mark S. Kemp
Author: Raphael D. Levine
Author: Kun Zhou
Author: Werner Ebeling