Statistics and Data Analysis for Microarrays using MATLAB , 2nd edition PDF Download

Author: Sorin Draghici
Publisher: Chapman and Hall/CRC
ISBN: 9781439809778
Category : Science
Languages : en
Pages : 706

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Book Description
Bridging the gap between introductory theory and practical knowledge, this second edition reflects the fast-moving field of DNA microarrays by adding new and updated chapters that cover cutting-edge microarray topics. This edition now offers the option of learning elements of MATLAB® in parallel with data analysis. The author also includes Bioconductor tools that are linked to the theoretical concepts discussed in the text. This edition also features more opportunities for readers to practice everything that they have learned from the book. The accompanying CD-ROM provides MATLAB code and tips on how to use the MATLAB Bioinformatics toolbox.

Author: Wendy L. Martinez
Publisher: CRC Press
ISBN: 1315349841
Category : Mathematics
Languages : en
Pages : 686

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Book Description
Praise for the Second Edition: "The authors present an intuitive and easy-to-read book. ... accompanied by many examples, proposed exercises, good references, and comprehensive appendices that initiate the reader unfamiliar with MATLAB." —Adolfo Alvarez Pinto, International Statistical Review "Practitioners of EDA who use MATLAB will want a copy of this book. ... The authors have done a great service by bringing together so many EDA routines, but their main accomplishment in this dynamic text is providing the understanding and tools to do EDA. —David A Huckaby, MAA Reviews Exploratory Data Analysis (EDA) is an important part of the data analysis process. The methods presented in this text are ones that should be in the toolkit of every data scientist. As computational sophistication has increased and data sets have grown in size and complexity, EDA has become an even more important process for visualizing and summarizing data before making assumptions to generate hypotheses and models. Exploratory Data Analysis with MATLAB, Third Edition presents EDA methods from a computational perspective and uses numerous examples and applications to show how the methods are used in practice. The authors use MATLAB code, pseudo-code, and algorithm descriptions to illustrate the concepts. The MATLAB code for examples, data sets, and the EDA Toolbox are available for download on the book’s website. New to the Third Edition Random projections and estimating local intrinsic dimensionality Deep learning autoencoders and stochastic neighbor embedding Minimum spanning tree and additional cluster validity indices Kernel density estimation Plots for visualizing data distributions, such as beanplots and violin plots A chapter on visualizing categorical data

Author: Sorin Draghici
Publisher: CRC Press
ISBN: 1439809763
Category : Computers
Languages : en
Pages : 1036

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Book Description
Richly illustrated in color, Statistics and Data Analysis for Microarrays Using R and Bioconductor, Second Edition provides a clear and rigorous description of powerful analysis techniques and algorithms for mining and interpreting biological information. Omitting tedious details, heavy formalisms, and cryptic notations, the text takes a hands-on,

Author: Wendy L. Martinez
Publisher: CRC Press
ISBN: 1420010867
Category : Mathematics
Languages : en
Pages : 792

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Book Description
As with the bestselling first edition, Computational Statistics Handbook with MATLAB, Second Edition covers some of the most commonly used contemporary techniques in computational statistics. With a strong, practical focus on implementing the methods, the authors include algorithmic descriptions of the procedures as well as

Author: Wendy L. Martinez
Publisher: CRC Press
ISBN: 1439812217
Category : Business & Economics
Languages : en
Pages : 525

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Book Description
Since the publication of the bestselling first edition, many advances have been made in exploratory data analysis (EDA). Covering innovative approaches for dimensionality reduction, clustering, and visualization, Exploratory Data Analysis with MATLAB®, Second Edition uses numerous examples and applications to show how the methods are used in practice. New to the Second Edition Discussions of nonnegative matrix factorization, linear discriminant analysis, curvilinear component analysis, independent component analysis, and smoothing splines An expanded set of methods for estimating the intrinsic dimensionality of a data set Several clustering methods, including probabilistic latent semantic analysis and spectral-based clustering Additional visualization methods, such as a rangefinder boxplot, scatterplots with marginal histograms, biplots, and a new method called Andrews’ images Instructions on a free MATLAB GUI toolbox for EDA Like its predecessor, this edition continues to focus on using EDA methods, rather than theoretical aspects. The MATLAB codes for the examples, EDA toolboxes, data sets, and color versions of all figures are available for download at http://pi-sigma.info

Author: MoonJung Cho
Publisher: CRC Press
ISBN: 1466596570
Category : Business & Economics
Languages : en
Pages : 286

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Book Description
Fulfilling the need for a practical user's guide, Statistics in MATLAB: A Primer provides an accessible introduction to the latest version of MATLAB and its extensive functionality for statistics. Assuming a basic knowledge of statistics and probability as well as a fundamental understanding of linear algebra concepts, this book:Covers capabilities

Author: Tadashi Imaizumi
Publisher: Springer Nature
ISBN: 9811527008
Category : Social Science
Languages : en
Pages : 472

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Book Description
This book focuses on the latest developments in behaviormetrics and data science, covering a wide range of topics in data analysis and related areas of data science, including analysis of complex data, analysis of qualitative data, methods for high-dimensional data, dimensionality reduction, visualization of such data, multivariate statistical methods, analysis of asymmetric relational data, and various applications to real data. In addition to theoretical and methodological results, it also shows how to apply the proposed methods to a variety of problems, for example in consumer behavior, decision making, marketing data, and social network structures. Moreover, it discuses methodological aspects and applications in a wide range of areas, such as behaviormetrics; behavioral science; psychology; and marketing, management and social sciences. Combining methodological advances with real-world applications collected from a variety of research fields, the book is a valuable resource for researchers and practitioners, as well as for applied statisticians and data analysts.

Author: Simon M. Lin
Publisher: Springer Science & Business Media
ISBN: 0306475987
Category : Science
Languages : en
Pages : 214

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Book Description
Microarray technology is a major experimental tool for functional genomic explorations, and will continue to be a major tool throughout this decade and beyond. The recent explosion of this technology threatens to overwhelm the scientific community with massive quantities of data. Because microarray data analysis is an emerging field, very few analytical models currently exist. Methods of Microarray Data Analysis II is the second book in this pioneering series dedicated to this exciting new field. In a single reference, readers can learn about the most up-to-date methods, ranging from data normalization, feature selection, and discriminative analysis to machine learning techniques. Currently, there are no standard procedures for the design and analysis of microarray experiments. Methods of Microarray Data Analysis II focuses on a single data set, using a different method of analysis in each chapter. Real examples expose the strengths and weaknesses of each method for a given situation, aimed at helping readers choose appropriate protocols and utilize them for their own data set. In addition, web links are provided to the programs and tools discussed in several chapters. This book is an excellent reference not only for academic and industrial researchers, but also for core bioinformatics/genomics courses in undergraduate and graduate programs.

Author: Ernst Wit
Publisher: John Wiley & Sons
ISBN: 9780470849934
Category : Mathematics
Languages : en
Pages : 286

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Book Description
Interest in microarrays has increased considerably in the last ten years. This increase in the use of microarray technology has led to the need for good standards of microarray experimental notation, data representation, and the introduction of standard experimental controls, as well as standard data normalization and analysis techniques. Statistics for Microarrays: Design, Analysis and Inference is the first book that presents a coherent and systematic overview of statistical methods in all stages in the process of analysing microarray data – from getting good data to obtaining meaningful results. Provides an overview of statistics for microarrays, including experimental design, data preparation, image analysis, normalization, quality control, and statistical inference. Features many examples throughout using real data from microarray experiments. Computational techniques are integrated into the text. Takes a very practical approach, suitable for statistically-minded biologists. Supported by a Website featuring colour images, software, and data sets. Primarily aimed at statistically-minded biologists, bioinformaticians, biostatisticians, and computer scientists working with microarray data, the book is also suitable for postgraduate students of bioinformatics.

Author: Wendy L. Martinez
Publisher: Chapman and Hall/CRC
ISBN: 9781584885665
Category : Mathematics
Languages : en
Pages : 792

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Book Description
As with the bestselling first edition, Computational Statistics Handbook with MATLAB®, Second Edition covers some of the most commonly used contemporary techniques in computational statistics. With a strong, practical focus on implementing the methods, the authors include algorithmic descriptions of the procedures as well as examples that illustrate the use of the algorithms in data analysis. Updated for MATLAB® R2007a and the Statistics Toolbox, Version 6.0, this edition incorporates many additional computational statistics topics. New to the Second Edition • New functions for multivariate normal and multivariate t distributions • Updated information on the new MATLAB functionality for univariate and bivariate histograms, glyphs, and parallel coordinate plots • New content on independent component analysis, nonlinear dimensionality reduction, and multidimensional scaling • New topics on linear classifiers, quadratic classifiers, and voting methods, such as bagging, boosting, and random forests • More methods for unsupervised learning, including model-based clustering and techniques for assessing the results of clustering • A new chapter on parametric models that covers spline regression models, logistic regression, and generalized linear models • Expanded information on smoothers, such as bin smoothing, running mean and line smoothers, and smoothing splines With numerous problems and suggestions for further reading, this accessible text facilitates an understanding of computational statistics concepts and how they are employed in data analysis.