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Author: Ilya Shmulevich Publisher: SIAM ISBN: 0898716926 Category : Mathematics Languages : en Pages : 276
Book Description
The first comprehensive treatment of probabilistic Boolean networks, unifying different strands of current research and addressing emerging issues.
Author: Ilya Shmulevich Publisher: SIAM ISBN: 0898716926 Category : Mathematics Languages : en Pages : 276
Book Description
The first comprehensive treatment of probabilistic Boolean networks, unifying different strands of current research and addressing emerging issues.
Author: Akutsu Tatsuya Publisher: World Scientific ISBN: 9813233443 Category : Computers Languages : en Pages : 228
Book Description
The Boolean network (BN) is a mathematical model of genetic networks and other biological networks. Although extensive studies have been done on BNs from a viewpoint of complex systems, not so many studies have been undertaken from a computational viewpoint. This book presents rigorous algorithmic results on important computational problems on BNs, which include inference of a BN, detection of singleton and periodic attractors in a BN, and control of a BN. This book also presents algorithmic results on fundamental computational problems on probabilistic Boolean networks and a Boolean model of metabolic networks. Although most contents of the book are based on the work by the author and collaborators, other important computational results and techniques are also reviewed or explained. Contents: Preliminaries Boolean Networks Detection of Attractors Detection of Singleton Attractors Detection of Periodic Attractors Identification of Boolean Networks Control of Boolean Networks Predecessor and Observability Problems Semi-Tensor Product Approach Analysis of Metabolic Networks Probabilistic Boolean Networks Identification of Probabilistic Boolean Networks Control of Probabilistic Boolean Networks Readership: Graduate students and researchers working on string theory and related topics. Keywords: Boolean Networks;Bioinformatics;Systems Biology;Combinatorial Algorithms;AttractorsReview: Key Features: Unique book focusing on computational aspects of Boolean networks Provide computational foundations on Boolean networks Contain recent and up-to-date results on algorithms for Boolean networks
Author: Daizhan Cheng Publisher: Springer Science & Business Media ISBN: 0857290975 Category : Science Languages : en Pages : 472
Book Description
Analysis and Control of Boolean Networks presents a systematic new approach to the investigation of Boolean control networks. The fundamental tool in this approach is a novel matrix product called the semi-tensor product (STP). Using the STP, a logical function can be expressed as a conventional discrete-time linear system. In the light of this linear expression, certain major issues concerning Boolean network topology – fixed points, cycles, transient times and basins of attractors – can be easily revealed by a set of formulae. This framework renders the state-space approach to dynamic control systems applicable to Boolean control networks. The bilinear-systemic representation of a Boolean control network makes it possible to investigate basic control problems including controllability, observability, stabilization, disturbance decoupling etc.
Author: Katsuhisa Horimoto Publisher: Springer Science & Business Media ISBN: 3540851003 Category : Computers Languages : en Pages : 256
Book Description
This book constitutes the refereed proceedings of the Third International Conference on Algebraic Biology, AB 2008, held at the Castle of Hagenberg, Austria in July 2008 as part of the RISC Summer 2008, organized by the Research Institute for Symbolic Computation. The 14 revised full papers presented together with 3 tutorial lectures were carefully reviewed and selected from 27 submissions. The conference is the interdisciplinary forum for the presentation of research on all aspects of applications of symbolic computation (computer algebra, computational logic, and related methods) to various issues in biology and life sciences as well as other problems in biology being approached with symbolic methods.
Author: David P. Rosin Publisher: Springer ISBN: 3319135783 Category : Science Languages : en Pages : 199
Book Description
This thesis focuses on the dynamics of autonomous Boolean networks, on the basis of Boolean logic functions in continuous time without external clocking. These networks are realized with integrated circuits on an electronic chip as a field programmable gate array (FPGA) with roughly 100,000 logic gates, offering an extremely flexible model system. It allows fast and cheap design cycles and large networks with arbitrary topologies and coupling delays. The author presents pioneering results on theoretical modeling, experimental realization, and selected applications. In this regard, three classes of novel dynamic behavior are investigated: (i) Chaotic Boolean networks are proposed as high-speed physical random number generators with high bit rates. (ii) Networks of periodic Boolean oscillators are home to long-living transient chimera states, i.e., novel patterns of coexisting domains of spatially coherent (synchronized) and incoherent (desynchronized) dynamics. (iii) Excitable networks exhibit cluster synchronization and can be used as fast artificial Boolean neurons whose spiking patterns can be controlled. This work presents the first experimental platform for large complex networks, which will facilitate exciting future developments.
Author: Samuli Niiranen Publisher: Springer Science & Business Media ISBN: 3642196217 Category : Technology & Engineering Languages : en Pages : 230
Book Description
Living beings require constant information processing for survival. In cells, information is being processed and propagated at various levels, from the gene regulatory network to chemical pathways, to the interaction with the environment. How this is achieved and how information is coded is still poorly understood. For example, what a cell interprets as information in the temporal level of an mRNA and what is interpreted as noise remains an open question. Recently, information theoretical methods and other tools, developed in the context of engineering and natural sciences, have been applied to study diverse biological processes. This book covers the latest findings on how information is processed in various biological processes, ranging from information processing and propagation in gene regulatory networks to information processing in natural language. An overview is presented of the state-of-the-art in information processing in biological systems and the opinion of current leaders in this research field on future research directions.
Author: Tomas Bures Publisher: ISBN: 9783030677329 Category : Computer science Languages : en Pages : 624
Book Description
This book contains the invited and contributed papers selected for presentation at SOFSEM 2021, the 47th International Conference on Current Trends in Theory and Practice of Computer Science, which was held online during January 25-28, 2021, hosted by the Free University of Bozen-Bolzano, Italy. The 33 full and 7 short papers included in the volume were carefully reviewed and selected from 100 submissions. They were organized in topical sections on: foundations of computer science; foundations of software engineering; foundations of data science and engineering; and foundations of algorithmic computational biology. The book also contains 5 invited papers.
Author: Yves Crama Publisher: Cambridge University Press ISBN: 1139498630 Category : Mathematics Languages : en Pages : 711
Book Description
Written by prominent experts in the field, this monograph provides the first comprehensive, unified presentation of the structural, algorithmic and applied aspects of the theory of Boolean functions. The book focuses on algebraic representations of Boolean functions, especially disjunctive and conjunctive normal form representations. This framework looks at the fundamental elements of the theory (Boolean equations and satisfiability problems, prime implicants and associated short representations, dualization), an in-depth study of special classes of Boolean functions (quadratic, Horn, shellable, regular, threshold, read-once functions and their characterization by functional equations) and two fruitful generalizations of the concept of Boolean functions (partially defined functions and pseudo-Boolean functions). Several topics are presented here in book form for the first time. Because of the depth and breadth and its emphasis on algorithms and applications, this monograph will have special appeal for researchers and graduate students in discrete mathematics, operations research, computer science, engineering and economics.
Author: Ilya Shmulevich
Author: Ilya Shmulevich
Author: Paul E. Dunne
Author: Akutsu Tatsuya
Author: Ingo Wegener
Author: Daizhan Cheng
Author: Katsuhisa Horimoto
Author: David P. Rosin
Author: Samuli Niiranen
Author: Tomas Bures
Author: Yves Crama