Molecule Tutorials - Herong's Tutorial Examples PDF Download
Are you looking for read ebook online? Search for your book and save it on your Kindle device, PC, phones or tablets. Download Molecule Tutorials - Herong's Tutorial Examples PDF full book. Access full book title Molecule Tutorials - Herong's Tutorial Examples by Herong Yang. Download full books in PDF and EPUB format.
Author: Herong Yang Publisher: HerongYang.com ISBN: Category : Science Languages : en Pages : 322
Book Description
This book is a collection of notes and tutorial examples written by the author while he was learning molecules and related tools. Topics include understanding atoms, bonds and molecules; introduction of atomic isotopes and elements; introduction of proteins and amino acids; introduction of protein kinases; molecule SDF (Structure Data File) format; generating PNG pictures from molecule SDF files; installing RDkit as molecule tool; visualizing molecule structure in 3-D with PyMol; generating molecule movie with PyMol. Updated in 2023 (Version v1.26) with minor updates. For latest updates and free sample chapters, visit https://www.herongyang.com/Molecule.
Author: Herong Yang Publisher: HerongYang.com ISBN: Category : Science Languages : en Pages : 322
Book Description
This book is a collection of notes and tutorial examples written by the author while he was learning molecules and related tools. Topics include understanding atoms, bonds and molecules; introduction of atomic isotopes and elements; introduction of proteins and amino acids; introduction of protein kinases; molecule SDF (Structure Data File) format; generating PNG pictures from molecule SDF files; installing RDkit as molecule tool; visualizing molecule structure in 3-D with PyMol; generating molecule movie with PyMol. Updated in 2023 (Version v1.26) with minor updates. For latest updates and free sample chapters, visit https://www.herongyang.com/Molecule.
Author: Herong Yang Publisher: HerongYang.com ISBN: Category : Science Languages : en Pages : 474
Book Description
This book is a collection of notes and tutorial examples written by the author while he was learning cheminformatics and related tools. Topics include SMILES (Simplified Molecular-Input Line-Entry System) specifications; Open Babel chemical toolbox for file format conversion; Fingerprint index files used by Open Babel for fast search; RDKit for cheminformatics and machine learning; Substructure search and decomposition with RDKit; RDKit performance on large molecule datasets; AlphaFold as an AI system to predict protein’s 3D structure. Updated in 2023 (Version v1.24) with minor updates. For latest updates and free sample chapters, visit https://www.herongyang.com/Cheminformatics.
Author: Dr. Herong Yang Publisher: Herong Yang ISBN: Category : Computers Languages : en Pages : 143
Book Description
This tutorial book is a collection of notes and sample codes written by the author while he was learning HTML himself. Topics include HTML5 and HTML 4.01 standards; HTML document structure; HTML element and attribute syntax; embedding SVG to generate graphics; embedding JavaScript code; adding (CSS Cascading Style Sheets) for display format; displayed and printed versions of HTML documents; responsive design of Web pages; MathML integration in HTML documents. Updated in 2023 (Version v2.30) on MathML tutorials. For latest updates and free sample chapters, visit https://www.herongyang.com/HTML.
Author: Herong Yang Publisher: HerongYang.com ISBN: Category : Science Languages : en Pages : 324
Book Description
This book is a collection of notes and tutorial examples written by the author while he was learning cheminformatics and related tools. Topics include SMILES (Simplified Molecular-Input Line-Entry System) specifications; Open Babel chemical toolbox for file format conversion; Fingerprint index files used by Open Babel for fast search; RDKit for cheminformatics and machine learning; Substructure search and decomposition with RDKit; RDKit performance on large molecule datasets; AlphaFold as an AI system to predict protein’s 3D structure. Updated in 2023 (Version v1.24) with minor updates. For latest updates and free sample chapters, visit https://www.herongyang.com/Cheminformatics.
Author: Herong Yang Publisher: HerongYang.com ISBN: Category : Computers Languages : en Pages : 582
Book Description
This book is a collection of notes and sample codes written by the author while he was learning macOS. Topics include Macintosh OS history; macOS basic functionalities; storage file systems; reviewing resource usage on running processes; installing productivity and programming tools; installing Java and related tools; installing Apache Web server and MySQL database server; using Keychain Access to manage passwords and certificates. Updated in 2023 (Version v3.07) with minor changes. For latest updates and free sample chapters, visit https://www.herongyang.com/Mac.
Author: Dr. Herong Yang Publisher: HerongYang.com ISBN: Category : Computers Languages : en Pages : 717
Book Description
This book is a collection of tutorial notes and sample codes written by the author while he was learning JVM GC (Garbage Collection) processes. Topics include Java Garbage Collectors, STW (Stop-The-World), Serial Collector, Parallel Collector, Concurrent Collector, G1 Collector, GC Algorithms, Generational GC, Regional GC, Heap Memory Management, Young/New Generation, Tenured/Old Generation, Object Reference, Eden Space, Survivor Spaces, Minor GC, Major GC, Full GC, Performance Tuning, Throughput/Latency Performance, Heap Footprint. Updated in 2022 (Version v1.11) with JVM 17. For latest updates and free sample chapters, visit https://www.herongyang.com/Java-GC.
Author: Herong Yang Publisher: HerongYang.com ISBN: Category : Computers Languages : en Pages : 333
Book Description
This Perl tutorial book is a collection of notes and sample codes written by the author while he was learning Perl language himself. Topics include introduction of ActivePerl; data types, variables and expressions; scalars, arrays, hash maps, and references; input/output and file systems; DBM files and MySQL access; socket communication; generating executables; XML::Simple and RPC:XML modules; LWP::UserAgent, HTTP::Request and SOAP::Lite modules; CGI, and IIS/Apache integrations. Updated in 2022 (Version v6.01) with minor updates. For latest updates and free sample chapters, visit https://www.herongyang.com/Perl.
Author: Herong Yang Publisher: HerongYang.com ISBN: Category : Computers Languages : en Pages : 472
Book Description
This PHP tutorial book is a collection of notes and sample codes written by the author while he was learning PHP himself. Topics include PHP script syntax; data types, variables, array, expressions, statements and functions; Web server integration; HTTP requests and controlling HTTP responses; sessions, cookies, and file uploads/downloads; MySQL database server access; files, directories, and ZIP archives; parsing HTML Documents; processing image files; SOAP extension; managing non-ASCII characters; classes and objects; using PHP on Windows, macOS and Linux; executing external programs on operating system. Updated in 2022 (Version v5.16) with minor changes. For latest updates and free sample chapters, visit https://www.herongyang.com/PHP.
Author: Herong Yang Publisher: HerongYang.com ISBN: Category : Computers Languages : en Pages : 346
Book Description
This book is a collection of notes and sample codes written by the author while he was learning Android system. Topics include Installing of Android SDK on Windows, Creating and running Android emulators, Developing First Android Application - HelloAndroid, Creating Android Project with 'android' Command, Building, Installing and Running the Debug Binary Package, Inspecting Android Application Package (APK) Files, Using Android Debug Bridge (adb) Tool, Copying files from and to Android device, Understanding Android File Systems, Using Android Java class libraries, Using 'adb logcat' Command for Debugging. Updated in 2023 (Version v3.05) with ADB tutorials. For latest updates and free sample chapters, visit https://www.herongyang.com/Android.
Author: Herong Yang Publisher: HerongYang.com ISBN: Category : Computers Languages : en Pages : 438
Book Description
This XML tutorial book is a collection of notes and sample codes written by the author while he was learning XML himself. Topics include introduction to XML, DTD (Document Type Definition), XSD (XML Schema Definition), XPath (XML Path Language), XSL (Extensible Stylesheet Language), XSLT (XSL Transformation), XSL-FO (Formatting Objects), DOM (Document Object Model), and SAX (Simple API for XML); viewing XML with Chrome, Firefox, Safari and IE Web browsers; XML tools with Notepad++ and Atom editors; generating and parsing XML with Java, PHP and Python programs; converting XML to and from JSON. Updated in 2024 (Version v5.25) with minor changes. For latest updates and free sample chapters, visit https://www.herongyang.com/XML.
Author: Herong Yang
Author: Herong Yang
Author: Herong Yang
Author: Dr. Herong Yang
Author: Herong Yang
Author: Herong Yang
Author: Dr. Herong Yang
Author: Herong Yang
Author: Herong Yang
Author: Herong Yang
Author: Herong Yang